Label20120907-165232
Tags baseline
Motivation Run the Hoc script with specific seeds for the RNGs
OutcomeQualitatatively similar results to previous run.
Date07/09/2012
Time16:52:32
Duration98.91 s
Launch modeserial

Code

Executable Repository Version Main file Arguments
NEURON 7.1 (/home/andrew/env/pyNN-0.7/bin/nrngui) https://bitbucket.org/apdavison/destexhe_jcns_2009 b0ba741de76f demo_cx05_N=500b_LTS.oc

Dependencies

NamePathVersion
atoltool.hoc/home/andrew/Apps/NEURON/build/7.1/share/nrn/lib/hoc/atoltool.hocunknown
chanbild.hoc/home/andrew/Apps/NEURON/build/7.1/share/nrn/lib/hoc/chanbild.hocunknown
family.hoc/home/andrew/Apps/NEURON/build/7.1/share/nrn/lib/hoc/family.hocunknown
inserter.hoc/home/andrew/Apps/NEURON/build/7.1/share/nrn/lib/hoc/inserter.hocunknown
movierun.hoc/home/andrew/Apps/NEURON/build/7.1/share/nrn/lib/hoc/movierun.hocunknown
nrngui.hoc/home/andrew/Apps/NEURON/build/7.1/share/nrn/lib/hoc/nrngui.hocunknown
pointman.hoc/home/andrew/Apps/NEURON/build/7.1/share/nrn/lib/hoc/pointman.hocunknown
shapebox.hoc/home/andrew/Apps/NEURON/build/7.1/share/nrn/lib/hoc/shapebox.hocunknown
stdgui.hoc/home/andrew/Apps/NEURON/build/7.1/share/nrn/lib/hoc/stdgui.hocunknown
stdlib.hoc/home/andrew/Apps/NEURON/build/7.1/share/nrn/lib/hoc/stdlib.hocunknown
stdrun.hoc/home/andrew/Apps/NEURON/build/7.1/share/nrn/lib/hoc/stdrun.hocunknown
varmeth1.hoc/home/andrew/Apps/NEURON/build/7.1/share/nrn/lib/hoc/varmeth1.hocunknown
wingroup.hoc/home/andrew/Apps/NEURON/build/7.1/share/nrn/lib/hoc/wingroup.hocunknown

Inputs

Outputs

Output files

/home/docker/site
20120907-165232/Vm170_cx05_LTS500b.dat 24a095389f189233daff026793dcce58c77fba8b text/plain 755.0 KB
20120907-165232/numspikes_cx05_LTS500b.dat df2e392db2d1d3f6fe6939fdb04d77af3717d515 text/plain 1.7 KB
20120907-165232/spiketimes_cx05_LTS500b.dat 9c962b12ab979809c4cbfb3e9a2e6e28e203dc7b text/plain 836.8 KB
20120907-165232/x86_64/.libs/IF_BG4.o 6991acb028f27862919a6352d2e1d33b79046fc3 application/octet-stream 41.9 KB
20120907-165232/x86_64/.libs/gen5.o 5a17fb2e2f04decc82335a84488f443e9afab9f0 application/octet-stream 40.4 KB
20120907-165232/x86_64/.libs/libnrnmech.la 3741bc76c86372487644b3e462e89aa54773b0c3 0 bytes
20120907-165232/x86_64/.libs/libnrnmech.lai 612ce33fcce50900f4279df26af679b2a9c1ab6c 1.5 KB
20120907-165232/x86_64/.libs/libnrnmech.so 46a48536cf67a3fd20826f821de8b4d12641f8c7 application/octet-stream 0 bytes
20120907-165232/x86_64/.libs/libnrnmech.so.0 46a48536cf67a3fd20826f821de8b4d12641f8c7 0 bytes
20120907-165232/x86_64/.libs/libnrnmech.so.0.0.0 46a48536cf67a3fd20826f821de8b4d12641f8c7 143.5 KB
20120907-165232/x86_64/.libs/mod_func.o 4686ab813bd79ff1677c961ddf08ed6baf036cb4 application/octet-stream 8.5 KB
20120907-165232/x86_64/.libs/multiAMPAexp.o f61f681d074fac6d65629b0bdb9c0d7f31be1fb8 application/octet-stream 54.0 KB
20120907-165232/x86_64/.libs/multiGABAAexp.o 28364623638e64e9e1384de857f089752f96bce8 application/octet-stream 54.1 KB
20120907-165232/x86_64/.libs/multiStimexp.o a4fc6d39adf41aca4667bc88c432776eaee5f298 application/octet-stream 54.0 KB
20120907-165232/x86_64/IF_BG4.c 07fe50f0d477a5101cb9e20ba0da6c8818a226ba text/plain 9.2 KB
20120907-165232/x86_64/IF_BG4.lo c7c648bf1bdda6aaa62964871dcad54c89c722dd 303 bytes
20120907-165232/x86_64/gen5.c bdc72caa33daff4389607a6007bf9c4b6ea9b489 text/plain 8.1 KB
20120907-165232/x86_64/gen5.lo 18f8a5a23b07dd0953f16898462a5633e2bed531 299 bytes
20120907-165232/x86_64/libnrnmech.la 3741bc76c86372487644b3e462e89aa54773b0c3 1.5 KB
20120907-165232/x86_64/mod_func.c a416c23a1677051dc6cba386b19f2969e207104b text/plain 533 bytes
20120907-165232/x86_64/mod_func.lo 813032efd41c05c83f6b4ba9baa49909387212bb 307 bytes
20120907-165232/x86_64/multiAMPAexp.c 772e12a4d9aa12f89262433fc470845330213e81 text/plain 11.8 KB
20120907-165232/x86_64/multiAMPAexp.lo 9ef8da94b62d3757a0308e907dc57ed157eee82e 315 bytes
20120907-165232/x86_64/multiGABAAexp.c 03198ead6b5a12df5db73da22bc52d7773e561ad text/plain 11.8 KB
20120907-165232/x86_64/multiGABAAexp.lo 2cedde97d218dfdcd1aa539777bf2f247c66613a 317 bytes
20120907-165232/x86_64/multiStimexp.c a4b0a968110ebe956bc1613c55d4b15a3f06ba96 text/plain 11.8 KB
20120907-165232/x86_64/multiStimexp.lo 0e937700fa845fcccb2ac9839cc4518b4e56b214 315 bytes
20120907-165232/x86_64/special 1c31abb60fbdab3d22160b635193c56b36e70516 393 bytes

Stdout & Stderr

NEURON -- Release 7.1 (359:7f113b76a94b) 2009-10-26
Duke, Yale, and the BlueBrain Project -- Copyright 1984-2008
See http://www.neuron.yale.edu/credits.html

Additional mechanisms from files
 IF_BG4.mod gen5.mod multiAMPAexp.mod multiGABAAexp.mod multiStimexp.mod
loading membrane mechanisms from /home/andrew/dev/destexhe_jcns_2009/demo_cx-lts/x86_64/.libs/libnrnmech.so
nrniv: unable to open font "*helvetica-medium-r-normal*--14*", using "fixed"
	1 

=======================================================================
            Network of 500 IF neurons in an active state
=======================================================================

----[ CREATING CELLS ]----
Cell 116  is LTS
Cell 156  is LTS
Cell 167  is LTS
Cell 207  is LTS
Cell 228  is LTS
Cell 238  is LTS
Cell 243  is LTS
Cell 254  is LTS
Cell 299  is LTS
Cell 341  is LTS
Cell 352  is LTS
Cell 387  is LTS
Cell 399  is LTS
----[ CREATING NETWORK ]----
Calculate connectivity of cortical cells...
MEAN SYNAPSES PER NEURON:
cortical excitatory inputs 29.95 
cortical inhibitory inputs 6.934 
----[ ADDING NETWORK INPUT ]----
Add stimulation of cortical neurons...
	1 
oc>Writing spikes on file...
Mean rate per RS cell (Hz) = 29.1555 
 standard deviation = 25.223281 
Mean rate per FS cell (Hz) = 32.71 
 standard deviation = 26.701346

Environment

NameIP addressProcessor ArchitectureSystem type ReleaseVersion
retina 127.0.1.1 x86_64 x86_64 64bit ELF Linux 2.6.38-11-generic #50-Ubuntu SMP Mon Sep 12 21:17:25 UTC 2011