Lab notebook: : 20120919-143435

Label	20120919-143435
Motivation	Run the Python version of the script: should get identical results to the Hoc version
Outcome	Output data files exactly match the baseline (experiment 20120907-165232)
Date	19/09/2012
Time	14:34:35
Duration	108.19 s
Launch mode	serial

Code

Executable	Repository	Version	Main file	Arguments
Python 2.7.1 (/home/andrew/env/pyNN-0.7/bin/python)	https://bitbucket.org/apdavison/destexhe_jcns_2009	6eedaaf82ddb	demo_cx05_N=500b_LTS.py

Dependencies

Name	Path	Version
distutils	/home/andrew/env/pyNN-0.7/lib/python2.7/distutils	2.7.1
encodings	/home/andrew/env/pyNN-0.7/lib/python2.7/encodings	unknown
neuron	/home/andrew/env/pyNN-0.7/lib/python2.7/site-packages/neuron	unknown
nose	/usr/lib/pymodules/python2.7/nose	0.11.4
numpy	/usr/lib/pymodules/python2.7/numpy	1.5.1
scipy	/usr/lib/python2.7/dist-packages/scipy	0.8.0

Inputs

Outputs

Output files

/home/docker/site
20120919-143435/Vm170_cx05_LTS500b.dat	24a095389f189233daff026793dcce58c77fba8b	text/plain	755.0 KB
20120919-143435/numspikes_cx05_LTS500b.dat	df2e392db2d1d3f6fe6939fdb04d77af3717d515	text/plain	1.7 KB
20120919-143435/spiketimes_cx05_LTS500b.dat	9c962b12ab979809c4cbfb3e9a2e6e28e203dc7b	text/plain	836.8 KB

Stdout & Stderr

MPI_Initialized==false, disabling MPI functionality.
NEURON -- Release 7.1 (359:7f113b76a94b) 2009-10-26
Duke, Yale, and the BlueBrain Project -- Copyright 1984-2008
See http://www.neuron.yale.edu/credits.html

loading membrane mechanisms from x86_64/.libs/libnrnmech.so
Additional mechanisms from files
 IF_BG4.mod gen5.mod multiAMPAexp.mod multiGABAAexp.mod multiStimexp.mod
NEURON: unable to open font "*helvetica-medium-r-normal*--14*", using "fixed"
	1 

=======================================================================
            Network of  500 IF neurons in an active state
=======================================================================

----[ CREATING CELLS ]----
Cell  116  is LTS
Cell  156  is LTS
Cell  167  is LTS
Cell  207  is LTS
Cell  228  is LTS
Cell  238  is LTS
Cell  243  is LTS
Cell  254  is LTS
Cell  299  is LTS
Cell  341  is LTS
Cell  352  is LTS
Cell  387  is LTS
Cell  399  is LTS
----[ CREATING NETWORK ]----
Calculate connectivity of cortical cells...
MEAN SYNAPSES PER NEURON:
cortical excitatory inputs  29.95
cortical inhibitory inputs  6.934
----[ ADDING NETWORK INPUT ]----
Add stimulation of cortical neurons...
>>> Writing spikes on file...
Mean rate per RS cell (Hz) =  29.1555
 standard deviation =  25.2232813042
Mean rate per FS cell (Hz) =  32.71
 standard deviation =  26.701346408
>>>

Environment

Name	IP address	Processor	Architecture		System type	Release	Version
retina	127.0.1.1	x86_64 x86_64	64bit	ELF	Linux	2.6.38-11-generic	#50-Ubuntu SMP Mon Sep 12 21:17:25 UTC 2011