Lab notebook: : 20120919-165731

Label	20120919-165731
Motivation	Check that refactoring hasn't affected results
Outcome	Results identical.
Date	19/09/2012
Time	16:57:31
Duration	215.41 s
Launch mode	serial

Code

Executable	Repository	Version	Main file	Arguments
Python 2.7.1 (/home/andrew/env/pyNN-0.7/bin/python)	https://bitbucket.org/apdavison/destexhe_jcns_2009	e402f306f7f8	demo_cx05_N=500b_LTS.py

Dependencies

Name	Path	Version
distutils	/home/andrew/env/pyNN-0.7/lib/python2.7/distutils	2.7.1
encodings	/home/andrew/env/pyNN-0.7/lib/python2.7/encodings	unknown
neuron	/home/andrew/env/pyNN-0.7/lib/python2.7/site-packages/neuron	unknown
nose	/usr/lib/pymodules/python2.7/nose	0.11.4
numpy	/usr/lib/pymodules/python2.7/numpy	1.5.1
pyNN	/home/andrew/env/pyNN-0.7/lib/python2.7/site-packages/pyNN	1214
scipy	/usr/lib/python2.7/dist-packages/scipy	0.8.0

Inputs

Outputs

Output files

/home/docker/site
20120919-165731/Vm0_cx05_LTS500b.dat	6fd5aa1c525ab1ce07272d48d548d810e8acc7dc	text/plain	702.1 KB
20120919-165731/Vm170_cx05_LTS500b.dat	08200b874c4bdad5b877cea0534dd5b0c98f4b0c	text/plain	740.3 KB
20120919-165731/Vm99_cx05_LTS500b.dat	b6ae204284ff6e4efc05c26068f2254e5722fc0f	text/plain	719.8 KB
20120919-165731/numspikes_cx05_LTS500b.dat	7838b81ee18d1c9a637d9e5d1caf2b08676240ec	text/plain	1.7 KB
20120919-165731/spiketimes_cx05_LTS500b.dat	aa0012449fa46f96953b586fae3ffdc298ec9710	text/plain	845.7 KB

Stdout & Stderr

MPI_Initialized==false, disabling MPI functionality.
NEURON -- Release 7.1 (359:7f113b76a94b) 2009-10-26
Duke, Yale, and the BlueBrain Project -- Copyright 1984-2008
See http://www.neuron.yale.edu/credits.html

loading membrane mechanisms from x86_64/.libs/libnrnmech.so
Additional mechanisms from files
 gen5.mod multiAMPAexp.mod multiGABAAexp.mod multiStimexp.mod
NEURON: unable to open font "*helvetica-medium-r-normal*--14*", using "fixed"
	1 
loading membrane mechanisms from /home/andrew/env/pyNN-0.7/lib/python2.7/site-packages/pyNN/neuron/nmodl/x86_64/.libs/libnrnmech.so
Additional mechanisms from files
 adexp.mod alphaisyn.mod alphasyn.mod expisyn.mod gsfa_grr.mod hh_traub.mod netstim2.mod refrac.mod reset.mod stdwa_guetig.mod stdwa_softlimits.mod stdwa_songabbott.mod stdwa_symm.mod tmgsyn.mod tmisyn.mod vecstim.mod

=======================================================================
            Network of  500 IF neurons in an active state
=======================================================================

----[ CREATING CELLS ]----
Cell  116  is LTS
Cell  156  is LTS
Cell  167  is LTS
Cell  207  is LTS
Cell  228  is LTS
Cell  238  is LTS
Cell  243  is LTS
Cell  254  is LTS
Cell  299  is LTS
Cell  341  is LTS
Cell  352  is LTS
Cell  387  is LTS
Cell  399  is LTS
----[ CREATING NETWORK ]----
Calculate connectivity of cortical cells...
MEAN SYNAPSES PER NEURON:
cortical excitatory inputs  29.95
cortical inhibitory inputs  6.934
----[ ADDING NETWORK INPUT ]----
Add stimulation of cortical neurons...
>>> Writing spikes to file...
Mean rate per RS cell (Hz) =  33.216
 standard deviation =  29.4361978523
Mean rate per FS cell (Hz) =  35.826
 standard deviation =  32.0133179161

Environment

Name	IP address	Processor	Architecture		System type	Release	Version
retina	127.0.1.1	x86_64 x86_64	64bit	ELF	Linux	2.6.38-11-generic	#50-Ubuntu SMP Mon Sep 12 21:17:25 UTC 2011