| Label | 20120920-150201 |
|---|---|
| Motivation | Replaced locally-defined AdExp cell class with BretteGerstnerIF. |
| Outcome | Results seem to be unchanged, but simulation time much longer. |
| Date | 20/09/2012 |
| Time | 15:02:01 |
| Duration | 741.77 s |
| Launch mode | serial |
| Executable | Repository | Version | Main file | Arguments |
|---|---|---|---|---|
| Python 2.7.1 (/home/andrew/env/pyNN-0.7/bin/python) | https://bitbucket.org/apdavison/destexhe_jcns_2009 | b84106ada1b9 | demo_cx05_N=500b_LTS.py |
| Name | Path | Version |
|---|---|---|
| Cheetah | /usr/lib/pymodules/python2.7/Cheetah | unknown |
| PIL | /usr/lib/python2.7/dist-packages/PIL | unknown |
| PyQt4 | /usr/lib/pymodules/python2.7/PyQt4 | unknown |
| csa | /home/andrew/env/pyNN-0.7/lib/python2.7/site-packages/csa | 0.0.4 |
| dateutil | /usr/lib/pymodules/python2.7/dateutil | 1.4.1 |
| distutils | /home/andrew/env/pyNN-0.7/lib/python2.7/distutils | 2.7.1 |
| encodings | /home/andrew/env/pyNN-0.7/lib/python2.7/encodings | unknown |
| glib | /usr/lib/python2.7/dist-packages/glib | unknown |
| gobject | /usr/lib/python2.7/dist-packages/gobject | unknown |
| jinja2 | /usr/lib/pymodules/python2.7/jinja2 | 2.5.5 |
| markupsafe | /usr/lib/python2.7/dist-packages/markupsafe | unknown |
| matplotlib | /home/andrew/env/pyNN-0.7/lib/python2.7/site-packages/matplotlib | 1.0.1 |
| mpi4py | /usr/local/lib/python2.7/dist-packages/mpi4py | 1.2.2 |
| mpl_toolkits | /home/andrew/env/pyNN-0.7/lib/python2.7/site-packages/mpl_toolkits | unknown |
| neuron | /home/andrew/env/pyNN-0.7/lib/python2.7/site-packages/neuron | unknown |
| nose | /usr/lib/pymodules/python2.7/nose | 0.11.4 |
| numpy | /usr/lib/pymodules/python2.7/numpy | 1.5.1 |
| pyNN | /home/andrew/env/pyNN-0.7/lib/python2.7/site-packages/pyNN | 1219 |
| pygments | /usr/lib/python2.7/dist-packages/pygments | 1.4 |
| pygsl | /usr/local/lib/python2.7/dist-packages/pygsl | 0.9.5 |
| pytz | /usr/lib/python2.7/dist-packages/pytz | 2010b |
| scipy | /usr/lib/python2.7/dist-packages/scipy | 0.8.0 |
| tables | /usr/lib/python2.7/dist-packages/tables | 2.1.2 |
| wx | /usr/lib/python2.7/dist-packages/wx-2.8-gtk2-unicode/wx | 2.8.11.0 (gtk2-unicode) |
| /home/docker/site | |||
| 20120920-150201/Vm0_cx05_LTS500b.dat | 10fe497a467f20e6f2095d19a08bd98624e650cd | text/plain | 717.2 KB |
| 20120920-150201/Vm170_cx05_LTS500b.dat | d1060ea8bc360ff932113331195406cd2acd85ff | text/plain | 739.9 KB |
| 20120920-150201/Vm99_cx05_LTS500b.dat | 6b7eb46ae7e85d60fcca46361ad0479c90071983 | text/plain | 728.1 KB |
| 20120920-150201/numspikes_cx05_LTS500b.dat | 5c10ce82087fdf15e24e6c089324f35349078adf | text/plain | 1.7 KB |
| 20120920-150201/spiketimes_cx05_LTS500b.dat | 806d49c25074989678a6f0292ee8603e38a9857b | text/plain | 778.1 KB |
MPI_Initialized==false, disabling MPI functionality.
NEURON -- Release 7.1 (359:7f113b76a94b) 2009-10-26
Duke, Yale, and the BlueBrain Project -- Copyright 1984-2008
See http://www.neuron.yale.edu/credits.html
NEURON: unable to open font "*helvetica-medium-r-normal*--14*", using "fixed"
1
loading membrane mechanisms from /home/andrew/env/pyNN-0.7/lib/python2.7/site-packages/pyNN/neuron/nmodl/x86_64/.libs/libnrnmech.so
Additional mechanisms from files
adexp.mod alphaisyn.mod alphasyn.mod expisyn.mod gsfa_grr.mod hh_traub.mod netstim2.mod refrac.mod reset.mod stdwa_guetig.mod stdwa_softlimits.mod stdwa_songabbott.mod stdwa_symm.mod tmgsyn.mod tmisyn.mod vecstim.mod
=======================================================================
Network of 500 IF neurons in an active state
=======================================================================
----[ CREATING CELLS ]----
Cell 116 is LTS
Cell 156 is LTS
Cell 167 is LTS
Cell 207 is LTS
Cell 228 is LTS
Cell 238 is LTS
Cell 243 is LTS
Cell 254 is LTS
Cell 299 is LTS
Cell 341 is LTS
Cell 352 is LTS
Cell 387 is LTS
Cell 399 is LTS
----[ CREATING NETWORK ]----
Calculate connectivity of cortical cells...
MEAN SYNAPSES PER NEURON:
cortical excitatory inputs 29.95
cortical inhibitory inputs 6.934
----[ ADDING NETWORK INPUT ]----
Add stimulation of cortical neurons...
>>> Writing spikes to file...
Mean rate per RS cell (Hz) = 30.1895
standard deviation = 26.1324585478
Mean rate per FS cell (Hz) = 34.342
standard deviation = 27.1685155281
>>>
Exception in thread Thread-1 (most likely raised during interpreter shutdown):
Traceback (most recent call last):
File "/usr/lib/python2.7/threading.py", line 552, in __bootstrap_inner
File "/home/andrew/env/pyNN-0.7/lib/python2.7/site-packages/neuron/gui.py", line 36, in run
File "/home/andrew/env/pyNN-0.7/lib/python2.7/site-packages/neuron/gui.py", line 17, in process_events
<type 'exceptions.AttributeError'>: 'NoneType' object has no attribute 'doNotify'
| Name | IP address | Processor | Architecture | System type | Release | Version | |
|---|---|---|---|---|---|---|---|
| retina | 127.0.1.1 | x86_64 x86_64 | 64bit | ELF | Linux | 2.6.38-11-generic | #50-Ubuntu SMP Mon Sep 12 21:17:25 UTC 2011 |