Label20120921-151517
Motivation Replaced list of spike sources by PyNN Population and direct NetCon creation with pyNN.connect()
OutcomeResults unchanged.
Date21/09/2012
Time15:15:17
Duration1133.50 s
Launch modedistributed, n=

Code

Executable Repository Version Main file Arguments
Python 2.7.1 (/home/andrew/env/pyNN-0.7/bin/python) https://bitbucket.org/apdavison/destexhe_jcns_2009 b5c41e4d9c80 demo_cx05_N=500b_LTS.py

Dependencies

NamePathVersion
Cheetah/usr/lib/pymodules/python2.7/Cheetahunknown
PIL/usr/lib/python2.7/dist-packages/PILunknown
PyQt4/usr/lib/pymodules/python2.7/PyQt4unknown
csa/home/andrew/env/pyNN-0.7/lib/python2.7/site-packages/csa0.0.4
dateutil/usr/lib/pymodules/python2.7/dateutil1.4.1
distutils/home/andrew/env/pyNN-0.7/lib/python2.7/distutils2.7.1
encodings/home/andrew/env/pyNN-0.7/lib/python2.7/encodingsunknown
glib/usr/lib/python2.7/dist-packages/glibunknown
gobject/usr/lib/python2.7/dist-packages/gobjectunknown
jinja2/usr/lib/pymodules/python2.7/jinja22.5.5
markupsafe/usr/lib/python2.7/dist-packages/markupsafeunknown
matplotlib/home/andrew/env/pyNN-0.7/lib/python2.7/site-packages/matplotlib1.0.1
mpi4py/usr/local/lib/python2.7/dist-packages/mpi4py1.2.2
mpl_toolkits/home/andrew/env/pyNN-0.7/lib/python2.7/site-packages/mpl_toolkitsunknown
neuron/home/andrew/env/pyNN-0.7/lib/python2.7/site-packages/neuronunknown
nose/usr/lib/pymodules/python2.7/nose0.11.4
numpy/usr/lib/pymodules/python2.7/numpy1.5.1
pyNN/home/andrew/env/pyNN-0.7/lib/python2.7/site-packages/pyNN1219
pygments/usr/lib/python2.7/dist-packages/pygments1.4
pygsl/usr/local/lib/python2.7/dist-packages/pygsl0.9.5
pytz/usr/lib/python2.7/dist-packages/pytz2010b
scipy/usr/lib/python2.7/dist-packages/scipy0.8.0
tables/usr/lib/python2.7/dist-packages/tables2.1.2
wx/usr/lib/python2.7/dist-packages/wx-2.8-gtk2-unicode/wx2.8.11.0 (gtk2-unicode)

Inputs

Outputs

Output files

20120921-151517/Vm_cx05_LTS500b.dat 8abfaabcc5105dcf508e673f705f3b8d80e578c1 text/plain 6.3 MB
20120921-151517/numspikes_cx05_LTS500b.dat 0b8a80e860d999a7ac466f46533d9adf957d805b text/plain 1.7 KB
20120921-151517/spiketimes_cx05_LTS500b.dat 3034205433bd14ce5c783c715f03b066711bb643 text/plain 2.2 MB

Stdout & Stderr

MPI_Initialized==false, disabling MPI functionality.
NEURON -- Release 7.1 (359:7f113b76a94b) 2009-10-26
Duke, Yale, and the BlueBrain Project -- Copyright 1984-2008
See http://www.neuron.yale.edu/credits.html

NEURON: unable to open font "*helvetica-medium-r-normal*--14*", using "fixed"
	1 
loading membrane mechanisms from /home/andrew/env/pyNN-0.7/lib/python2.7/site-packages/pyNN/neuron/nmodl/x86_64/.libs/libnrnmech.so
Additional mechanisms from files
 adexp.mod alphaisyn.mod alphasyn.mod expisyn.mod gsfa_grr.mod hh_traub.mod netstim2.mod refrac.mod reset.mod stdwa_guetig.mod stdwa_softlimits.mod stdwa_songabbott.mod stdwa_symm.mod tmgsyn.mod tmisyn.mod vecstim.mod

=======================================================================
            Network of  500 IF neurons in an active state
=======================================================================

----[ CREATING CELLS ]----
Cell  116  is LTS
Cell  156  is LTS
Cell  167  is LTS
Cell  207  is LTS
Cell  228  is LTS
Cell  238  is LTS
Cell  243  is LTS
Cell  254  is LTS
Cell  299  is LTS
Cell  341  is LTS
Cell  352  is LTS
Cell  387  is LTS
Cell  399  is LTS
----[ CREATING NETWORK ]----
Calculate connectivity of cortical cells...
MEAN SYNAPSES PER NEURON:
cortical excitatory inputs  29.95
cortical inhibitory inputs  6.934
----[ ADDING NETWORK INPUT ]----
Add stimulation of cortical neurons...
>>> Writing spikes to file...
Mean rate per RS cell (Hz) =  37.799
 standard deviation =  43.9427855171
Mean rate per FS cell (Hz) =  39.602
 standard deviation =  49.7807472423

Unhandled exception in thread started by <bound method LoopTimer.__bootstrap of <LoopTimer(Thread-1, stopped daemon 140394506192640)>>
Traceback (most recent call last):
  File "/usr/lib/python2.7/threading.py", line 525, in __bootstrap
    self.__bootstrap_inner()
  File "/usr/lib/python2.7/threading.py", line 565, in __bootstrap_inner
    (self.name, _format_exc()))
  File "/usr/lib/python2.7/traceback.py", line 240, in format_exc
    etype, value, tb = sys.exc_info()
AttributeError: 'NoneType' object has no attribute 'exc_info'

Environment

NameIP addressProcessor ArchitectureSystem type ReleaseVersion
retina 127.0.1.1 x86_64 x86_64 64bit ELF Linux 2.6.38-11-generic #50-Ubuntu SMP Mon Sep 12 21:17:25 UTC 2011