Label | 20120928-105047 |
Motivation |
Running pure PyNN version with NEURON backend |
Outcome | Network structure different due to different random number generator. Mean firing rate of RS cells 24.9 Hz |
---|
Date | 28/09/2012 |
Time | 10:50:47 |
Duration | 59.93 s |
Launch mode | serial |
Code
Dependencies
Name | Path | Version |
distutils | /home/andrew/env/pyNN-0.7/lib/python2.7/distutils | 2.7.1 |
encodings | /home/andrew/env/pyNN-0.7/lib/python2.7/encodings | unknown |
mpi4py | /usr/local/lib/python2.7/dist-packages/mpi4py | 1.2.2 |
neuron | /home/andrew/env/pyNN-0.7/lib/python2.7/site-packages/neuron | unknown |
nose | /usr/lib/pymodules/python2.7/nose | 0.11.4 |
numpy | /usr/lib/pymodules/python2.7/numpy | 1.5.1 |
pyNN | /home/andrew/env/pyNN-0.7/lib/python2.7/site-packages/pyNN | 1219 |
pygsl | /usr/local/lib/python2.7/dist-packages/pygsl | 0.9.5 |
scipy | /usr/lib/python2.7/dist-packages/scipy | 0.8.0 |
Inputs
Outputs
Output files
Stdout & Stderr
NEURON -- Release 7.1 (359:7f113b76a94b) 2009-10-26
Duke, Yale, and the BlueBrain Project -- Copyright 1984-2008
See http://www.neuron.yale.edu/credits.html
Additional mechanisms from files
adexp.mod alphaisyn.mod alphasyn.mod expisyn.mod gsfa_grr.mod hh_traub.mod netstim2.mod refrac.mod reset.mod stdwa_guetig.mod stdwa_softlimits.mod stdwa_songabbott.mod stdwa_symm.mod tmgsyn.mod tmisyn.mod vecstim.mod
MPI_Initialized==true, enabling MPI funtionality.
numprocs=1
loading membrane mechanisms from /home/andrew/env/pyNN-0.7/lib/python2.7/site-packages/pyNN/neuron/nmodl/x86_64/.libs/libnrnmech.so
=======================================================================
Network of 500 IF neurons in an active state
=======================================================================
----[ CREATING CELLS ]----
Cell 33 is LTS
Cell 60 is LTS
Cell 78 is LTS
Cell 92 is LTS
Cell 101 is LTS
Cell 107 is LTS
Cell 142 is LTS
Cell 148 is LTS
Cell 161 is LTS
Cell 168 is LTS
Cell 198 is LTS
Cell 202 is LTS
Cell 220 is LTS
Cell 266 is LTS
Cell 269 is LTS
Cell 288 is LTS
Cell 314 is LTS
Cell 316 is LTS
Cell 327 is LTS
Cell 359 is LTS
Cell 383 is LTS
----[ CREATING NETWORK ]----
Calculate connectivity of cortical cells...
MEAN SYNAPSES PER NEURON:
cortical excitatory inputs 29.838
cortical inhibitory inputs 6.852
----[ ADDING NETWORK INPUT ]----
Add stimulation of cortical neurons...
Writing spikes to file...
Mean rate per RS cell (Hz) = 24.874
standard deviation = 26.8441562356
Mean rate per FS cell (Hz) = 34.59
standard deviation = 34.6417710286
Environment
Name | IP address | Processor |
Architecture | System type |
Release | Version |
retina |
127.0.1.1 |
x86_64 x86_64 |
64bit |
ELF |
Linux |
2.6.38-11-generic |
#50-Ubuntu SMP Mon Sep 12 21:17:25 UTC 2011 |