Label20120928-105047
Motivation Running pure PyNN version with NEURON backend
OutcomeNetwork structure different due to different random number generator. Mean firing rate of RS cells 24.9 Hz
Date28/09/2012
Time10:50:47
Duration59.93 s
Launch modedistributed, n=

Code

Executable Repository Version Main file Arguments
Python 2.7.1 (/home/andrew/env/pyNN-0.7/bin/python) https://bitbucket.org/apdavison/destexhe_jcns_2009 05644ae81d7c demo_cx05_N=500b_LTS.py neuron

Dependencies

NamePathVersion
distutils/home/andrew/env/pyNN-0.7/lib/python2.7/distutils2.7.1
encodings/home/andrew/env/pyNN-0.7/lib/python2.7/encodingsunknown
mpi4py/usr/local/lib/python2.7/dist-packages/mpi4py1.2.2
neuron/home/andrew/env/pyNN-0.7/lib/python2.7/site-packages/neuronunknown
nose/usr/lib/pymodules/python2.7/nose0.11.4
numpy/usr/lib/pymodules/python2.7/numpy1.5.1
pyNN/home/andrew/env/pyNN-0.7/lib/python2.7/site-packages/pyNN1219
pygsl/usr/local/lib/python2.7/dist-packages/pygsl0.9.5
scipy/usr/lib/python2.7/dist-packages/scipy0.8.0

Inputs

Outputs

Output files

20120928-105047/Vm_cx05_LTS500b_neuron.dat 96c26ab952b6d3b661760cba9c2a66253da3d1a0 text/plain 6.3 MB
20120928-105047/numspikes_cx05_LTS500b_neuron.dat 2fd19d10369b29b7727d998e8bfbaab91f34aee1 text/plain 1.7 KB
20120928-105047/spiketimes_cx05_LTS500b_neuron.dat 417b55f79dc87a667c7bebccbfa983ee4eafd4e2 text/plain 1.6 MB

Stdout & Stderr

NEURON -- Release 7.1 (359:7f113b76a94b) 2009-10-26
Duke, Yale, and the BlueBrain Project -- Copyright 1984-2008
See http://www.neuron.yale.edu/credits.html

Additional mechanisms from files
 adexp.mod alphaisyn.mod alphasyn.mod expisyn.mod gsfa_grr.mod hh_traub.mod netstim2.mod refrac.mod reset.mod stdwa_guetig.mod stdwa_softlimits.mod stdwa_songabbott.mod stdwa_symm.mod tmgsyn.mod tmisyn.mod vecstim.mod
MPI_Initialized==true, enabling MPI funtionality.
numprocs=1
loading membrane mechanisms from /home/andrew/env/pyNN-0.7/lib/python2.7/site-packages/pyNN/neuron/nmodl/x86_64/.libs/libnrnmech.so

=======================================================================
            Network of  500 IF neurons in an active state
=======================================================================

----[ CREATING CELLS ]----
Cell  33  is LTS
Cell  60  is LTS
Cell  78  is LTS
Cell  92  is LTS
Cell  101  is LTS
Cell  107  is LTS
Cell  142  is LTS
Cell  148  is LTS
Cell  161  is LTS
Cell  168  is LTS
Cell  198  is LTS
Cell  202  is LTS
Cell  220  is LTS
Cell  266  is LTS
Cell  269  is LTS
Cell  288  is LTS
Cell  314  is LTS
Cell  316  is LTS
Cell  327  is LTS
Cell  359  is LTS
Cell  383  is LTS
----[ CREATING NETWORK ]----
Calculate connectivity of cortical cells...
MEAN SYNAPSES PER NEURON:
cortical excitatory inputs  29.838
cortical inhibitory inputs  6.852
----[ ADDING NETWORK INPUT ]----
Add stimulation of cortical neurons...
Writing spikes to file...
Mean rate per RS cell (Hz) =  24.874
 standard deviation =  26.8441562356
Mean rate per FS cell (Hz) =  34.59
 standard deviation =  34.6417710286

Environment

NameIP addressProcessor ArchitectureSystem type ReleaseVersion
retina 127.0.1.1 x86_64 x86_64 64bit ELF Linux 2.6.38-11-generic #50-Ubuntu SMP Mon Sep 12 21:17:25 UTC 2011