Label20120928-110419
Motivation Running pure PyNN version with NEST backend
OutcomeNetwork structure same as for NEURON simulation, as expected. Mean firing rate of RS cells 26.7 Hz
Date28/09/2012
Time11:04:19
Duration143.48 s
Launch modedistributed, n=

Code

Executable Repository Version Main file Arguments
Python 2.7.1 (/home/andrew/env/pyNN-0.7/bin/python) https://bitbucket.org/apdavison/destexhe_jcns_2009 05644ae81d7c demo_cx05_N=500b_LTS.py nest

Dependencies

NamePathVersion
distutils/home/andrew/env/pyNN-0.7/lib/python2.7/distutils2.7.1
encodings/home/andrew/env/pyNN-0.7/lib/python2.7/encodingsunknown
mpi4py/usr/local/lib/python2.7/dist-packages/mpi4py1.2.2
neuron/home/andrew/env/pyNN-0.7/lib/python2.7/site-packages/neuronunknown
nose/usr/lib/pymodules/python2.7/nose0.11.4
numpy/usr/lib/pymodules/python2.7/numpy1.5.1
pyNN/home/andrew/env/pyNN-0.7/lib/python2.7/site-packages/pyNN1219
pygsl/usr/local/lib/python2.7/dist-packages/pygsl0.9.5
scipy/usr/lib/python2.7/dist-packages/scipy0.8.0

Inputs

Outputs

Output files

20120928-110419/Vm_cx05_LTS500b_nest.dat c2a1da1bdda7afea4f4ac7faf0c0cb1d92317af0 text/plain 5.5 MB
20120928-110419/numspikes_cx05_LTS500b_nest.dat 600afeaa8f3e0cb75fce4a750f750b66e5afc297 text/plain 1.6 KB
20120928-110419/spiketimes_cx05_LTS500b_nest.dat 7a2267c2cc5da421d828d7a654087e058df5a2a2 text/plain 1.5 MB

Stdout & Stderr


           -- N E S T 2 beta --
          Neural Simulation Tool
  Copyright 1995-2009 The NEST Initiative
   Version 2.0-0-rc4 Jun  1 2012 12:29:59

This program is provided AS IS and comes with
NO WARRANTY. See the file LICENSE for details.

Problems or suggestions?
  Website     : http://www.nest-initiative.org
  Mailing list: nest_user@nest-initiative.org

Type 'nest.help()' to find out more about NEST.

=======================================================================
            Network of  500 IF neurons in an active state
=======================================================================

----[ CREATING CELLS ]----
Cell  33  is LTS
Cell  60  is LTS
Cell  78  is LTS
Cell  92  is LTS
Cell  101  is LTS
Cell  107  is LTS
Cell  142  is LTS
Cell  148  is LTS
Cell  161  is LTS
Cell  168  is LTS
Cell  198  is LTS
Cell  202  is LTS
Cell  220  is LTS
Cell  266  is LTS
Cell  269  is LTS
Cell  288  is LTS
Cell  314  is LTS
Cell  316  is LTS
Cell  327  is LTS
Cell  359  is LTS
Cell  383  is LTS
----[ CREATING NETWORK ]----
Calculate connectivity of cortical cells...
MEAN SYNAPSES PER NEURON:
cortical excitatory inputs  29.838
cortical inhibitory inputs  6.852
----[ ADDING NETWORK INPUT ]----
Add stimulation of cortical neurons...
Writing spikes to file...
Mean rate per RS cell (Hz) =  26.657
 standard deviation =  30.0176439948
Mean rate per FS cell (Hz) =  36.57
 standard deviation =  36.8567754965
[retina:14065] *** Process received signal ***
[retina:14065] Signal: Aborted (6)
[retina:14065] Signal code:  (-6)
[retina:14065] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0xfc60) [0x7fcba142cc60]
[retina:14065] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35) [0x7fcba0236d05]
[retina:14065] [ 2] /lib/x86_64-linux-gnu/libc.so.6(abort+0x186) [0x7fcba023aab6]
[retina:14065] [ 3] /lib/x86_64-linux-gnu/libc.so.6(+0x6cd7b) [0x7fcba026fd7b]
[retina:14065] [ 4] /lib/x86_64-linux-gnu/libc.so.6(+0x7808a) [0x7fcba027b08a]
[retina:14065] [ 5] /lib/x86_64-linux-gnu/libc.so.6(+0x78528) [0x7fcba027b528]
[retina:14065] [ 6] /lib/x86_64-linux-gnu/libc.so.6(cfree+0x73) [0x7fcba027f8e3]
[retina:14065] [ 7] /home/andrew/env/pyNN-0.7/bin/python(PyObject_Free+0x1b3) [0x47bf63]
[retina:14065] [ 8] /home/andrew/env/pyNN-0.7/bin/python(PyTuple_ClearFreeList+0x156) [0x488176]
[retina:14065] [ 9] /home/andrew/env/pyNN-0.7/bin/python() [0x4af6ec]
[retina:14065] [10] /home/andrew/env/pyNN-0.7/bin/python(PyGC_Collect+0x23) [0x43084f]
[retina:14065] [11] /home/andrew/env/pyNN-0.7/bin/python(Py_Finalize+0x126) [0x42cff5]
[retina:14065] [12] /home/andrew/env/pyNN-0.7/bin/python(Py_Main+0xb5d) [0x418d32]
[retina:14065] [13] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xff) [0x7fcba0221eff]
[retina:14065] [14] /home/andrew/env/pyNN-0.7/bin/python() [0x4c62b1]
[retina:14065] *** End of error message ***
Aborted

Environment

NameIP addressProcessor ArchitectureSystem type ReleaseVersion
retina 127.0.1.1 x86_64 x86_64 64bit ELF Linux 2.6.38-11-generic #50-Ubuntu SMP Mon Sep 12 21:17:25 UTC 2011