Lab notebook: : 20120928-111936

Label	20120928-111936
Motivation	Running latest version with NEURON
Outcome	Mean firing rate of RS cells 26.4 Hz
Date	28/09/2012
Time	11:19:36
Duration	61.22 s
Launch mode	serial

Code

Executable	Repository	Version	Main file	Arguments
Python 2.7.1 (/home/andrew/env/pyNN-0.7/bin/python)	https://bitbucket.org/apdavison/destexhe_jcns_2009	5f6221aa3a14	demo_cx05_N=500b_LTS.py	neuron

Dependencies

Name	Path	Version
distutils	/home/andrew/env/pyNN-0.7/lib/python2.7/distutils	2.7.1
encodings	/home/andrew/env/pyNN-0.7/lib/python2.7/encodings	unknown
mpi4py	/usr/local/lib/python2.7/dist-packages/mpi4py	1.2.2
neuron	/home/andrew/env/pyNN-0.7/lib/python2.7/site-packages/neuron	unknown
nose	/usr/lib/pymodules/python2.7/nose	0.11.4
numpy	/usr/lib/pymodules/python2.7/numpy	1.5.1
pyNN	/home/andrew/env/pyNN-0.7/lib/python2.7/site-packages/pyNN	1219
pygsl	/usr/local/lib/python2.7/dist-packages/pygsl	0.9.5
scipy	/usr/lib/python2.7/dist-packages/scipy	0.8.0

Inputs

Outputs

Output files

/home/docker/site
20120928-111936/Vm_cx05_LTS500b_neuron.dat	a0100e0c450d1b192dacfa0f4f8358437023e8af	text/plain	6.3 MB
20120928-111936/numspikes_cx05_LTS500b_neuron.dat	f7149b27588a97a1185ef4efd14aaae935bbf3dc	text/plain	1.7 KB
20120928-111936/spiketimes_cx05_LTS500b_neuron.dat	bd5f3b504f3188a3c425c6f2edf28fddd4eea51e	text/plain	1.7 MB

Stdout & Stderr

NEURON -- Release 7.1 (359:7f113b76a94b) 2009-10-26
Duke, Yale, and the BlueBrain Project -- Copyright 1984-2008
See http://www.neuron.yale.edu/credits.html

Additional mechanisms from files
 adexp.mod alphaisyn.mod alphasyn.mod expisyn.mod gsfa_grr.mod hh_traub.mod netstim2.mod refrac.mod reset.mod stdwa_guetig.mod stdwa_softlimits.mod stdwa_songabbott.mod stdwa_symm.mod tmgsyn.mod tmisyn.mod vecstim.mod
MPI_Initialized==true, enabling MPI funtionality.
numprocs=1
loading membrane mechanisms from /home/andrew/env/pyNN-0.7/lib/python2.7/site-packages/pyNN/neuron/nmodl/x86_64/.libs/libnrnmech.so

=======================================================================
            Network of  500 IF neurons in an active state
=======================================================================

----[ CREATING CELLS ]----
Cell  33  is LTS
Cell  60  is LTS
Cell  78  is LTS
Cell  92  is LTS
Cell  101  is LTS
Cell  107  is LTS
Cell  142  is LTS
Cell  148  is LTS
Cell  161  is LTS
Cell  168  is LTS
Cell  198  is LTS
Cell  202  is LTS
Cell  220  is LTS
Cell  266  is LTS
Cell  269  is LTS
Cell  288  is LTS
Cell  314  is LTS
Cell  316  is LTS
Cell  327  is LTS
Cell  359  is LTS
Cell  383  is LTS
----[ CREATING NETWORK ]----
Calculate connectivity of cortical cells...
MEAN SYNAPSES PER NEURON:
cortical excitatory inputs  29.838
cortical inhibitory inputs  6.852
----[ ADDING NETWORK INPUT ]----
Add stimulation of cortical neurons...
Writing spikes to file...
Mean rate per RS cell (Hz) =  26.3885
 standard deviation =  26.4771064837
Mean rate per FS cell (Hz) =  36.714
 standard deviation =  32.0515491669

Environment

Name	IP address	Processor	Architecture		System type	Release	Version
retina	127.0.1.1	x86_64 x86_64	64bit	ELF	Linux	2.6.38-11-generic	#50-Ubuntu SMP Mon Sep 12 21:17:25 UTC 2011